Here is an example using Python. One possibility is to use skimage.morphology.convex_hull_image(), but this only supports 2D images, so then i have to call this function slice by slice (in the z-axis), which is slow. This implementation is called the concave hull. (ndarray of ints, shape (nvertices,)) Indices of points forming the vertices of the convex hull. A Convex object is one with no interior angles greater than 180 degrees. The unique convex hull for the set of points on the left, and a concave hull for these points on the right . Interactive PyQt app: generate alpha shapes (concave hulls) using Matplotlib, shapely, and arcpy inside ArcGIS Pro - concave_hulls_pyqt.py Numpy itself has parallel programming capabilities that you might be able to take advantage of. The concave hull is non-unique, and you decide how much ‘wrap’ you may want your concave hull to have around points by choosing the number of nearest neighbours. points (ndarray of double, shape (npoints, ndim)) Coordinates of input points. A shape that is not convex is called Non-Convex or Concave. For other dimensions, they are in input order. Here’s what the concave hull looks like when applied to the same set of points as in the previous image: Concave Hull. ... import numpy as np # Read Input image img = cv2.imread("Hammer.png", 1) Moreover, it contains KDTree implementations for nearest-neighbor point queries, and utilities for distance computations in various metrics. simplices To find a "concave hull" around a set of 3D points, I found that using the marching cube algorithm for volumetric data works best. neighbors In python import the module and use the compute method to compute a concave hull. Here is an example using Python. simplices (ndarray of ints, shape (nfacet, ndim)) Indices of points forming the simplical facets of the convex hull. The concave hull creation is a separate algorithm, that can be implemented in different ways. To run it, you first need to transform your cloud of 3D points into a volumetric dataset. Fortunately, there are alternatives to this state of affairs: we can calculate a concave hull. Given a set of points that define a shape, how do we find its convex hull? I'm not actually sure if a concave hull algorithm could be parallelized, but it feels like it could be split into quadrants to allow multiple cores to tackle different sections at once. import numpy as np from ConcaveHull import ConcaveHull ch = ConcaveHull() pts = np.random.uniform(size=(100, 2)) ch.loadpoints(pts) ch.calculatehull() boundary_points = np.vstack(ch.boundary.exterior.coords.xy).T # boundary_points is a subset of pts corresponding to the concave hull vertex_neighbor_vertices: Neighboring vertices of vertices. This can be useful for point clouds of complicated geometries. Spatial data structures and algorithms (scipy.spatial)¶scipy.spatial can compute triangulations, Voronoi diagrams, and convex hulls of a set of points, by leveraging the Qhull library.. Following the calculation of a convex hull as described a few weeks ago, I’ve worked up a way to approximate a “concave” hull. In our case, it was implemented using the graphs. Finding Contours using Convex Hull. Concave Hull. Usage. That’s why I keep using “ “ around “concave hull”. ... As you can see, the list of points is implemented as a NumPy array for performance reasons. Whereas the convex hull is a well defined concept, concave hulls are less so, verging on the subjective. With the FLANN_DIR variable set run the setup.py file using pip, by running the following command in the concave hull directory: pip install . given a binary input numpy image in 3D, find its convex hull; and return a list of indices or similar of the voxels (3D pixels) that are within this 3D convex hull. convex_hull: Vertices of facets forming the convex hull of the point set. For 2-D convex hulls, the vertices are in counterclockwise order. Hammer.Png '', 1 vertices are in counterclockwise order hull is a concave hull numpy algorithm, that can useful. Other dimensions, they are in counterclockwise order in our case, it was implemented using the.... 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